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Crystal structure of Poz1, Tpz1 and Rap1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5XXE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 277 0.2 M Potassium nitrate, 20%(w/v) PEG3350
Crystal Properties Matthews coefficient Solvent content 3.05 59.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.159 α = 90 b = 85.741 β = 90 c = 116.044 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.97861 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 100 0.101 0.11 0.043 5.7 6.5 15449
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 100 0.732 0.801 0.32 0.819 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5XXE 3.1 50 14259 748 98.45 0.2526 0.2499 0.2485 0.3023 0.304 RANDOM 71.445
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.68 -0.14 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.257 r_dihedral_angle_3_deg 18.322 r_dihedral_angle_4_deg 17.183 r_dihedral_angle_1_deg 5.609 r_angle_refined_deg 1.118 r_angle_other_deg 0.919 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_bond_other_d 0.003 r_gen_planes_refined 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.257 r_dihedral_angle_3_deg 18.322 r_dihedral_angle_4_deg 17.183 r_dihedral_angle_1_deg 5.609 r_angle_refined_deg 1.118 r_angle_other_deg 0.919 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4572 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 2
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction