☰ Navigation Tabs
Hetero-micro-seeding: Crystal structure of BPTI-[555]C14GA38I variant using micro-seeds from -C14GA38L variant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZVX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 20-30%PEG4000; 0.2M Lithium Sulfate; 0.1M Tris-HCl, pH8.5
Crystal Properties Matthews coefficient Solvent content 2.18 43.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 25.279 α = 90 b = 41.479 β = 99.35 c = 53.971 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 101 CCD AGILENT EOS CCD 2010-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 53.25 96.9 4.23 3.6 27383
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.35 98.8 0.28 0.28 4.23 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZVX 1.3 53.25 25022 1446 96.64 0.16471 0.1623 0.1711 0.20647 0.2116 RANDOM 12.408
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.273 r_dihedral_angle_4_deg 14.174 r_dihedral_angle_3_deg 13.87 r_dihedral_angle_1_deg 6.428 r_long_range_B_refined 5.387 r_long_range_B_other 4.79 r_scangle_other 3.112 r_angle_refined_deg 2.424 r_scbond_it 2.129 r_scbond_other 2.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.273 r_dihedral_angle_4_deg 14.174 r_dihedral_angle_3_deg 13.87 r_dihedral_angle_1_deg 6.428 r_long_range_B_refined 5.387 r_long_range_B_other 4.79 r_scangle_other 3.112 r_angle_refined_deg 2.424 r_scbond_it 2.129 r_scbond_other 2.122 r_mcangle_other 1.687 r_mcangle_it 1.681 r_angle_other_deg 1.322 r_mcbond_it 1.137 r_mcbond_other 1.103 r_chiral_restr 0.236 r_bond_refined_d 0.027 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 902 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 10
Software Software Software Name Purpose SHELXL data collection DENZO data reduction SCALA data scaling REFMAC refinement