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Structure of CYP106A2 from Bacillus sp. PAMC 23377
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M sodium cacodylate:HCl pH 6.5, 1.26 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.59 52.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.658 α = 90 b = 77.658 β = 90 c = 282.216 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9795 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.4 40.2 11.6 14704
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 48.68 13914 714 99.4 0.19406 0.19066 0.1932 0.25674 0.2562 RANDOM 57.205
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 -0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.278 r_dihedral_angle_3_deg 18.699 r_dihedral_angle_4_deg 18.39 r_long_range_B_refined 9.891 r_long_range_B_other 9.89 r_scangle_other 7.683 r_dihedral_angle_1_deg 7.353 r_mcangle_other 6.157 r_mcangle_it 6.156 r_scbond_it 4.779
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.278 r_dihedral_angle_3_deg 18.699 r_dihedral_angle_4_deg 18.39 r_long_range_B_refined 9.891 r_long_range_B_other 9.89 r_scangle_other 7.683 r_dihedral_angle_1_deg 7.353 r_mcangle_other 6.157 r_mcangle_it 6.156 r_scbond_it 4.779 r_scbond_other 4.777 r_mcbond_it 4.033 r_mcbond_other 4.027 r_angle_refined_deg 1.656 r_angle_other_deg 1.035 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3196 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data processing