5XME
Solution structure of C-terminal domain of TRADD
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6 mM U-99% 13C; U-99% 15N;U-98% 2H TRADD DD | 95% H2O/5% D2O | 5.0 | 1 atm | 301 | Bruker AVANCE 800 | |
2 | 2D 1H-13C HSQC aromatic | 0.6 mM U-99% 13C; U-99% 15N;U-98% 2H TRADD DD | 95% H2O/5% D2O | 5.0 | 1 atm | 301 | Bruker AVANCE 800 | |
3 | 2D 1H-13C HSQC aliphatic | 0.6 mM U-99% 13C; U-99% 15N;U-98% 2H TRADD DD | 95% H2O/5% D2O | 5.0 | 1 atm | 301 | Bruker AVANCE 800 | |
4 | 3D HNCA | 0.6 mM U-99% 13C; U-99% 15N;U-98% 2H TRADD DD | 95% H2O/5% D2O | 5.0 | 1 atm | 301 | Bruker AVANCE 800 | |
5 | 3D HN(CO)CA | 0.6 mM U-99% 13C; U-99% 15N;U-98% 2H TRADD DD | 95% H2O/5% D2O | 5.0 | 1 atm | 301 | Bruker AVANCE 800 | |
6 | 3D HCCH-TOCSY | 0.6 mM U-99% 13C; U-99% 15N;U-98% 2H TRADD DD | 95% H2O/5% D2O | 5.0 | 1 atm | 301 | Bruker AVANCE 800 | |
7 | 4D 13C, 15N-edited NOESY | 0.6 mM U-99% 13C; U-99% 15N;U-98% 2H TRADD DD | 95% H2O/5% D2O | 5.0 | 1 atm | 301 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, molecular dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | data analysis | NMRView | Johnson, One Moon Scientific |