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TEAD in complex with fragment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.4 293 2.6M sodium formate, 0.1M Tris pH 8.4, 5 % glycerol, 2mM magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.4 63.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.5 α = 90 b = 74.5 β = 90 c = 252.5 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193 CCD ADSC QUANTUM 315r 2014-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 0.987 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 99.9 8.3 11 36473
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3L15 2.22 30 34696 1777 99.87 0.19937 0.19813 0.2112 0.22342 0.2292 RANDOM 48.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.11 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.319 r_dihedral_angle_4_deg 18.822 r_dihedral_angle_3_deg 12.942 r_long_range_B_refined 8.912 r_long_range_B_other 8.911 r_dihedral_angle_1_deg 7.101 r_scangle_other 6.418 r_mcangle_it 5.189 r_mcangle_other 5.188 r_scbond_it 4.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.319 r_dihedral_angle_4_deg 18.822 r_dihedral_angle_3_deg 12.942 r_long_range_B_refined 8.912 r_long_range_B_other 8.911 r_dihedral_angle_1_deg 7.101 r_scangle_other 6.418 r_mcangle_it 5.189 r_mcangle_other 5.188 r_scbond_it 4.312 r_scbond_other 4.311 r_mcbond_it 3.433 r_mcbond_other 3.428 r_angle_refined_deg 1.524 r_angle_other_deg 0.904 r_chiral_restr 0.1 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3450 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling PHASER phasing