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Crystal structure of human DEAH-box RNA helicase DHX15 in complex with ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG4000, lithium sulfate, sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.45 49.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.919 α = 90 b = 89.377 β = 90 c = 211.078 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2016-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 105.9 99.98 18.4 13.5 31906
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 105.54 50047 2649 99.99 0.22523 0.22282 0.2285 0.26911 0.2665 RANDOM 61.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.676 r_dihedral_angle_4_deg 16.692 r_dihedral_angle_3_deg 16.007 r_dihedral_angle_1_deg 7.279 r_long_range_B_refined 5.677 r_long_range_B_other 5.669 r_mcangle_it 3.415 r_mcangle_other 3.415 r_scangle_other 3.408 r_mcbond_it 2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.676 r_dihedral_angle_4_deg 16.692 r_dihedral_angle_3_deg 16.007 r_dihedral_angle_1_deg 7.279 r_long_range_B_refined 5.677 r_long_range_B_other 5.669 r_mcangle_it 3.415 r_mcangle_other 3.415 r_scangle_other 3.408 r_mcbond_it 2.16 r_mcbond_other 2.16 r_scbond_it 2.13 r_scbond_other 2.119 r_angle_refined_deg 1.656 r_angle_other_deg 1.028 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5458 Nucleic Acid Atoms Solvent Atoms 90 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing