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Crystal structure of TS2/16 Fv-clasp fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 1.2M NaH2PO4/0.8M K2HPO4, 0.1M CAPS (pH10.5), 0.2M Li2SO4
Crystal Properties Matthews coefficient Solvent content 2.72 54.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.2 α = 90 b = 69.2 β = 90 c = 171.54 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2015-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 47.05 99.6 0.129 18.42 15.8 27142
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.17 97.4 0.967 3.94 15.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.04 47.05 25835 1306 99.57 0.19574 0.19412 0.22711 0.2191 RANDOM 31.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.1 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.489 r_dihedral_angle_4_deg 16.62 r_dihedral_angle_3_deg 12.321 r_dihedral_angle_1_deg 5.797 r_long_range_B_refined 3.68 r_long_range_B_other 3.679 r_angle_refined_deg 1.288 r_scangle_other 1.254 r_mcangle_it 1.03 r_mcangle_other 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.489 r_dihedral_angle_4_deg 16.62 r_dihedral_angle_3_deg 12.321 r_dihedral_angle_1_deg 5.797 r_long_range_B_refined 3.68 r_long_range_B_other 3.679 r_angle_refined_deg 1.288 r_scangle_other 1.254 r_mcangle_it 1.03 r_mcangle_other 1.03 r_angle_other_deg 0.896 r_scbond_it 0.762 r_scbond_other 0.759 r_mcbond_it 0.599 r_mcbond_other 0.598 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2606 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing