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Crystal structure of calaxin with calcium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.2 293 calcium acetate, PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.35 47.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.54 α = 90 b = 65.54 β = 90 c = 113.54 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS VII 2010-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 20 98.9 32.1 6.6 40393
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.85 19.77 38347 2046 98.94 0.1787 0.17661 0.1849 0.21883 0.2248 RANDOM 26.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 0.4 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.47 r_dihedral_angle_4_deg 16.564 r_dihedral_angle_3_deg 15.231 r_long_range_B_refined 7.078 r_long_range_B_other 7.077 r_dihedral_angle_1_deg 6.451 r_scangle_other 5.646 r_scbond_it 3.655 r_scbond_other 3.654 r_mcangle_other 3.571
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.47 r_dihedral_angle_4_deg 16.564 r_dihedral_angle_3_deg 15.231 r_long_range_B_refined 7.078 r_long_range_B_other 7.077 r_dihedral_angle_1_deg 6.451 r_scangle_other 5.646 r_scbond_it 3.655 r_scbond_other 3.654 r_mcangle_other 3.571 r_mcangle_it 3.57 r_mcbond_it 2.555 r_mcbond_other 2.546 r_angle_refined_deg 1.988 r_angle_other_deg 0.946 r_chiral_restr 0.128 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3170 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling autoSHARP phasing