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Trehalose synthase from Thermobaculum terrenum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 293 lithium sulfate monohydrate, 0.1 M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 3.74 67.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.176 α = 90 b = 159.176 β = 90 c = 152.815 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2016-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AichiSR BEAMLINE BL2S1 0.987 AichiSR BL2S1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 100 63.6 14.3 34034
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FREE R-VALUE 2.501 39.794 1.33 34034 1727 99.83 0.1704 0.1684 0.1701 0.2088 0.2101
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.717 f_angle_d 0.966 f_chiral_restr 0.056 f_bond_d 0.008 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4548 Nucleic Acid Atoms Solvent Atoms 250 Heterogen Atoms 12
Software Software Software Name Purpose PHENIX refinement HKL-2000 data collection HKL-2000 data scaling HKL-3000 phasing