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CO bound cytochrome c oxidase at 20 nsec after pump laser irradiation to release CO from O2 reduction center
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 6.8 277 40 mM sodium phosphate, 0.2% decyl maltoside, 2% ethylene glycol, PEG 4000
Crystal Properties Matthews coefficient Solvent content 4.26 71.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.849 α = 90 b = 209.485 β = 90 c = 179.524 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 CCD RAYONIX MX225HE 2015-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SACLA BEAMLINE BL3 1.24020 SACLA BL3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 14.99 98.2 0.1624 0.9576 6.28 63.23 266141
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 79.6 0.4131 0.4967 4.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 15 252489 13569 97.67 0.1843 0.1819 0.1824 0.2296 0.2299 RANDOM 72.697
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.89 4.94 -4.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.898 r_dihedral_angle_3_deg 18.114 r_dihedral_angle_4_deg 17.423 r_dihedral_angle_1_deg 6.641 r_angle_refined_deg 1.832 r_chiral_restr 0.114 r_bond_refined_d 0.013 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 28506 Nucleic Acid Atoms Solvent Atoms 972 Heterogen Atoms 2236
Software Software Software Name Purpose REFMAC refinement cctbx.xfel data processing cctbx.prime data scaling REFMAC phasing