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Covalent bond formation of bifunctional ligand with hPPARg-LBD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 0.1M Tris-HCl PH 7.4, 0.8M sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.62 53.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93 α = 90 b = 61.43 β = 102.85 c = 118.5 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 50.86 88.4 17.1 2.1 24512
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.34 50.86 23285 1226 88.14 0.23107 0.22946 0.2333 0.25948 0.2568 RANDOM 56.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.02 0.27 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.845 r_dihedral_angle_4_deg 25.239 r_dihedral_angle_3_deg 16.294 r_dihedral_angle_1_deg 5.563 r_long_range_B_refined 1.734 r_long_range_B_other 1.734 r_angle_refined_deg 1.576 r_mcangle_it 1.25 r_mcangle_other 1.25 r_scangle_other 1.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.845 r_dihedral_angle_4_deg 25.239 r_dihedral_angle_3_deg 16.294 r_dihedral_angle_1_deg 5.563 r_long_range_B_refined 1.734 r_long_range_B_other 1.734 r_angle_refined_deg 1.576 r_mcangle_it 1.25 r_mcangle_other 1.25 r_scangle_other 1.227 r_mcbond_it 0.864 r_mcbond_other 0.864 r_angle_other_deg 0.85 r_scbond_other 0.794 r_scbond_it 0.793 r_chiral_restr 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4002 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement