☰ Navigation Tabs
Crystal structure of a carbonyl reductase from Pseudomonas aeruginosa PAO1 in complex with NADP (condition II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5WQM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 1.26 M sodium phosphate mono basic monohydrate, 0.14 M potassium phosphate dibasic, pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.29 46.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.562 α = 90 b = 74.901 β = 90 c = 90.991 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 1.0 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.9 16.8 6.5 49982
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5WQM 1.7 50 47863 1997 99.55 0.15634 0.15534 0.1699 0.17992 0.1919 RANDOM 21.537
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 0.07 1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.296 r_dihedral_angle_4_deg 14.822 r_dihedral_angle_3_deg 12.311 r_long_range_B_refined 8.873 r_long_range_B_other 8.729 r_scangle_other 7.629 r_dihedral_angle_1_deg 5.991 r_scbond_it 5.56 r_scbond_other 5.532 r_mcangle_it 3.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.296 r_dihedral_angle_4_deg 14.822 r_dihedral_angle_3_deg 12.311 r_long_range_B_refined 8.873 r_long_range_B_other 8.729 r_scangle_other 7.629 r_dihedral_angle_1_deg 5.991 r_scbond_it 5.56 r_scbond_other 5.532 r_mcangle_it 3.082 r_mcangle_other 3.082 r_mcbond_it 2.295 r_mcbond_other 2.295 r_angle_refined_deg 1.91 r_angle_other_deg 1.071 r_chiral_restr 0.125 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3430 Nucleic Acid Atoms Solvent Atoms 467 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing