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Crystal structure of a carbonyl reductase from Pseudomonas aeruginosa PAO1 (condition II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5WQM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.2 M ammonium acetate, 0.1M Bis-Tris pH 5.5, 25% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.9 35.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.191 α = 90 b = 131.18 β = 90 c = 143.552 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 1.0 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.9 18.5 6.5 51221
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5WQM 2 50 49111 2000 99.68 0.19325 0.1913 0.1999 0.24153 0.2455 RANDOM 32.406
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.26 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.593 r_dihedral_angle_4_deg 20.547 r_dihedral_angle_3_deg 15.279 r_long_range_B_other 9.48 r_long_range_B_refined 9.477 r_scangle_other 7.871 r_dihedral_angle_1_deg 5.915 r_scbond_it 5.785 r_scbond_other 5.785 r_mcangle_it 4.753
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.593 r_dihedral_angle_4_deg 20.547 r_dihedral_angle_3_deg 15.279 r_long_range_B_other 9.48 r_long_range_B_refined 9.477 r_scangle_other 7.871 r_dihedral_angle_1_deg 5.915 r_scbond_it 5.785 r_scbond_other 5.785 r_mcangle_it 4.753 r_mcangle_other 4.753 r_mcbond_it 3.541 r_mcbond_other 3.541 r_angle_refined_deg 1.651 r_angle_other_deg 1.01 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6583 Nucleic Acid Atoms Solvent Atoms 402 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing