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Human TRPML1 channel structure in closed conformation
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.394 r_long_range_B_refined 32.487 r_long_range_B_other 32.486 r_mcangle_it 21.255 r_mcangle_other 21.255 r_scangle_other 19.411 r_dihedral_angle_3_deg 15.827 r_mcbond_it 13.04 r_mcbond_other 13.033 r_dihedral_angle_4_deg 12.237
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.394 r_long_range_B_refined 32.487 r_long_range_B_other 32.486 r_mcangle_it 21.255 r_mcangle_other 21.255 r_scangle_other 19.411 r_dihedral_angle_3_deg 15.827 r_mcbond_it 13.04 r_mcbond_other 13.033 r_dihedral_angle_4_deg 12.237 r_scbond_it 11.264 r_scbond_other 11.263 r_dihedral_angle_1_deg 7.689 r_angle_refined_deg 1.253 r_angle_other_deg 0.961 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name NITROGEN Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 56105 Reported Resolution (Å) 3.72 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C4
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 1.6
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION CTF CORRECTION CTFFIND4 RECONSTRUCTION FREALIGN
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION