5WHW

Using sound pulses to solve the crystal harvesting bottleneck


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5FON 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52951.6 M sodium nitrate, 0.16 M calcium chloride, 0.2 M bis-tris pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.1242.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.719α = 90
b = 67.719β = 90
c = 107.323γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2017-06-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.97908NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7157.2799.756.812.926111

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5fon1.7157.2726111135699.750.152680.151580.17332RANDOM15.469
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.28-0.280.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.836
r_dihedral_angle_4_deg21.62
r_dihedral_angle_3_deg12.873
r_long_range_B_refined6.581
r_dihedral_angle_1_deg6.551
r_long_range_B_other5.533
r_scangle_other3.303
r_scbond_it2.284
r_scbond_other2.283
r_angle_refined_deg2.102
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.836
r_dihedral_angle_4_deg21.62
r_dihedral_angle_3_deg12.873
r_long_range_B_refined6.581
r_dihedral_angle_1_deg6.551
r_long_range_B_other5.533
r_scangle_other3.303
r_scbond_it2.284
r_scbond_other2.283
r_angle_refined_deg2.102
r_mcangle_other1.664
r_mcangle_it1.663
r_mcbond_it1.243
r_mcbond_other1.24
r_angle_other_deg1.01
r_chiral_restr0.132
r_bond_refined_d0.024
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2032
Nucleic Acid Atoms
Solvent Atoms427
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing