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Using sound pulses to solve the crystal harvesting bottleneck
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FON
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 1.6 M sodium nitrate, 0.16 M calcium chloride, 0.2 M bis-tris pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.12 42.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.719 α = 90 b = 67.719 β = 90 c = 107.323 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2017-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.97908 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 57.27 99.75 6.8 12.9 26111
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5fon 1.71 57.27 26111 1356 99.75 0.15268 0.15158 0.1659 0.17332 0.184 RANDOM 15.469
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.28 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.836 r_dihedral_angle_4_deg 21.62 r_dihedral_angle_3_deg 12.873 r_long_range_B_refined 6.581 r_dihedral_angle_1_deg 6.551 r_long_range_B_other 5.533 r_scangle_other 3.303 r_scbond_it 2.284 r_scbond_other 2.283 r_angle_refined_deg 2.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.836 r_dihedral_angle_4_deg 21.62 r_dihedral_angle_3_deg 12.873 r_long_range_B_refined 6.581 r_dihedral_angle_1_deg 6.551 r_long_range_B_other 5.533 r_scangle_other 3.303 r_scbond_it 2.284 r_scbond_other 2.283 r_angle_refined_deg 2.102 r_mcangle_other 1.664 r_mcangle_it 1.663 r_mcbond_it 1.243 r_mcbond_other 1.24 r_angle_other_deg 1.01 r_chiral_restr 0.132 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2032 Nucleic Acid Atoms Solvent Atoms 427 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing