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Native FEZ-1 metallo-beta-lactamase from Legionella gormanii
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K07
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG4000, 0.2M ammonium sulfate, 0.010MM ZnCl2, pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.27 45.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.86 α = 90 b = 76.85 β = 102.08 c = 78.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2001-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.9 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 97.9 0.029 21.9 3.5 61308
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 96.9 0.051 0.037 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1K07 1.65 24.93 55140 6172 97.29 0.1267 0.1232 0.1394 0.1581 0.1706 RANDOM 13.134
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 0.04 0.12 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.94 r_dihedral_angle_3_deg 10.947 r_dihedral_angle_4_deg 9.845 r_dihedral_angle_1_deg 5.7 r_sphericity_bonded 2.785 r_angle_refined_deg 1.354 r_angle_other_deg 0.968 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.94 r_dihedral_angle_3_deg 10.947 r_dihedral_angle_4_deg 9.845 r_dihedral_angle_1_deg 5.7 r_sphericity_bonded 2.785 r_angle_refined_deg 1.354 r_angle_other_deg 0.968 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4121 Nucleic Acid Atoms Solvent Atoms 865 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALA data scaling AMoRE phasing PDB_EXTRACT data extraction