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Crystal structure of Xanthomonas campestris OleA E117Q bound with Cerulenin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 292 15% PEG 4000, 100 MM MANGANESE CHLORIDE, 100 MM MES PH 6.0
Crystal Properties Matthews coefficient Solvent content 2.28 41.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.262 α = 90 b = 90.262 β = 90 c = 69.416 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2015-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.03317 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 29.55 99.7 0.081 0.089 0.037 0.999 17.6 5.6 20256 32.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.13 96.7 0.804 0.901 0.398 0.594 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.07 29.55 19219 1016 99.65 0.1802 0.1768 0.1877 0.2443 0.2428 RANDOM 44.049
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.03 0.06 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.41 r_dihedral_angle_4_deg 17.985 r_dihedral_angle_3_deg 16.79 r_dihedral_angle_1_deg 6.711 r_angle_refined_deg 2.098 r_angle_other_deg 1.104 r_chiral_restr 0.115 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.41 r_dihedral_angle_4_deg 17.985 r_dihedral_angle_3_deg 16.79 r_dihedral_angle_1_deg 6.711 r_angle_refined_deg 2.098 r_angle_other_deg 1.104 r_chiral_restr 0.115 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2513 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 17
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing XDS data reduction