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Structure of Pin1 WW Domain Sequence 1 Substituted with [S,S]ACPC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GWT PDB entry 4GWT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1 M sodium acetate, pH 4.5, 2.0 M ammonium sulfate (Hampton Index #2), cryoprotection: 4:1 Index #2:glycerol
Crystal Properties Matthews coefficient Solvent content 2.66 53.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.332 α = 90 b = 47.332 β = 90 c = 38.545 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.9787 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 47.33 99.1 0.044 0.008 43.3 27.9 7363 23.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 98.6 1.968 0.363 2.4 28.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 4GWT 1.5 33.47 6633 707 98.79 0.19181 0.18541 0.1831 0.25265 0.2503 RANDOM 31.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.93 -1.93 3.86
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 72.956 r_sphericity_bonded 33.425 r_dihedral_angle_2_deg 30.964 r_dihedral_angle_3_deg 13.829 r_long_range_B_refined 11.052 r_dihedral_angle_4_deg 10.768 r_long_range_B_other 9.131 r_dihedral_angle_1_deg 6.564 r_mcangle_other 4.831 r_mcangle_it 4.72
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 72.956 r_sphericity_bonded 33.425 r_dihedral_angle_2_deg 30.964 r_dihedral_angle_3_deg 13.829 r_long_range_B_refined 11.052 r_dihedral_angle_4_deg 10.768 r_long_range_B_other 9.131 r_dihedral_angle_1_deg 6.564 r_mcangle_other 4.831 r_mcangle_it 4.72 r_scangle_other 4.494 r_scbond_it 4.112 r_mcbond_it 3.931 r_scbond_other 3.78 r_mcbond_other 3.495 r_rigid_bond_restr 2.973 r_angle_refined_deg 1.746 r_angle_other_deg 1.435 r_chiral_restr 0.107 r_bond_refined_d 0.016 r_gen_planes_refined 0.012 r_gen_planes_other 0.008 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 274 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing