☰ Navigation Tabs
Crystal structure of HCMV Pentamer in complex with neutralizing antibody 9I6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5VOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 293 10% (wt/vol) PEG methyl ether 500
0.1 M MES pH 6.2
0.00001 M phenol
Crystal Properties Matthews coefficient Solvent content 4.43 72.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.259 α = 90 b = 208.82 β = 90 c = 267.979 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.9787 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 5.9 45.71 100 0.129 0.968 8.6 7.7 11302 332.37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 5.9 6.1 100 0.805 0.869 2.4 7.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5VOB 5.9 45.71 11268 504 100 0.26 0.258 0.2832 0.299 0.3506 RANDOM 75.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -114.4072 121.5964 -7.1892
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 3.99 t_omega_torsion 3.18 t_angle_deg 1.3 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 3.99 t_omega_torsion 3.18 t_angle_deg 1.3 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13668 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 267
Software Software Software Name Purpose BUSTER refinement XDS data reduction XSCALE data scaling PHENIX phasing