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Backbone structure of the Yersinia pestis outer membrane protein Ail in phospholipid bilayer nanodisc
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N TROSY 0.66 mM [U-13C; U-15N; U-2H] Ail, 49.5 mM DMPC, 16.5 mM DMPG, 5 mM sodium chloride, 25 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.5 1 atm 313 Bruker AVANCE III 800 2 3D TROSY-HNCA 0.66 mM [U-13C; U-15N; U-2H] Ail, 49.5 mM DMPC, 16.5 mM DMPG, 5 mM sodium chloride, 25 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.5 1 atm 313 Bruker AVANCE III 800 3 3D 15N-NOESY 0.66 mM [U-13C; U-15N; U-2H] Ail, 49.5 mM DMPC, 16.5 mM DMPG, 5 mM sodium chloride, 25 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.5 1 atm 313 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin Bruker Biospin 6 chemical shift assignment CARA Keller and Wuthrich 3 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore