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Structure of the intact Haliangium ochraceum microcompartment shell
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other EMD-8747 EM map
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 6% PEG-20000
0.1M Bicine pH 8.9
Crystal Properties Matthews coefficient Solvent content 6.12 79.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 394.34 α = 90 b = 638.09 β = 90 c = 642.15 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.03317 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.51 3.69 98.2 0.0132 3.6 15.8 880323 85.2215508701
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.51 3.69 92.7 0.116 0.26 0.4 13.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE EM map 3.51015467477 39.8501711014 1.32803567478 878895 20018 88.6131146946 0.280056559999 0.279040970204 0.2792 0.323487705436 0.3234 101.665542029
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.22577909852 f_angle_d 0.864041674529 f_chiral_restr 0.0535595370351 f_plane_restr 0.00612703328598 f_bond_d 0.00450844975263
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 215283 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing