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CaV beta2a subunit: CaV1.2 AID-CAP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T3S PDB entry 1T3S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 277 34-37% PEG400, 0.1 M magnesium chloride, 0.1 M MES, pH 6.3
Crystal Properties Matthews coefficient Solvent content 2.63 53.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.805 α = 90 b = 81.805 β = 90 c = 163.271 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS3 S 6M 2012-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 53.5 86.6 0.109 5.9 1.3 23913
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 90.1 1.937 0.4 1.4 3646
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1T3S 2 15 25636 1388 98.08 0.18676 0.18437 0.23021 0.2272 RANDOM 49.383
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.03 -0.52 -1.03 3.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.246 r_dihedral_angle_3_deg 14.206 r_dihedral_angle_4_deg 13.461 r_long_range_B_refined 6.55 r_long_range_B_other 6.324 r_dihedral_angle_1_deg 5.798 r_angle_other_deg 3.947 r_scangle_other 3.811 r_mcangle_it 3.151 r_mcangle_other 3.151
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.246 r_dihedral_angle_3_deg 14.206 r_dihedral_angle_4_deg 13.461 r_long_range_B_refined 6.55 r_long_range_B_other 6.324 r_dihedral_angle_1_deg 5.798 r_angle_other_deg 3.947 r_scangle_other 3.811 r_mcangle_it 3.151 r_mcangle_other 3.151 r_scbond_it 2.32 r_scbond_other 2.32 r_mcbond_it 1.927 r_mcbond_other 1.925 r_angle_refined_deg 1.193 r_chiral_restr 0.064 r_gen_planes_other 0.022 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2366 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing