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Cytokine-receptor complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JZJ 4JZJ, 1JLI experimental model PDB 1JLI 4JZJ, 1JLI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 293 20% PEG 8000, 200 mM NaCl and 100 mM citrate-phosphate buffer pH 4.8
Crystal Properties Matthews coefficient Solvent content 3.33 63.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.461 α = 90 b = 106.461 β = 90 c = 96.116 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.954 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 92.2 99 0.08 19.7 16.1 23081
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.39 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JZJ, 1JLI 2.4 92.2 23081 1242 99.72 0.21763 0.21633 0.2195 0.24199 0.2394 RANDOM 70.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.24 0.48 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.569 r_dihedral_angle_3_deg 16.522 r_dihedral_angle_4_deg 16.414 r_dihedral_angle_1_deg 6.456 r_long_range_B_refined 5.854 r_long_range_B_other 5.853 r_mcangle_it 3.115 r_mcangle_other 3.114 r_scangle_other 2.887 r_mcbond_other 1.737
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.569 r_dihedral_angle_3_deg 16.522 r_dihedral_angle_4_deg 16.414 r_dihedral_angle_1_deg 6.456 r_long_range_B_refined 5.854 r_long_range_B_other 5.853 r_mcangle_it 3.115 r_mcangle_other 3.114 r_scangle_other 2.887 r_mcbond_other 1.737 r_mcbond_it 1.736 r_scbond_it 1.632 r_scbond_other 1.631 r_angle_refined_deg 1.55 r_angle_other_deg 0.995 r_chiral_restr 0.103 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2958 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing