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PCY1 Y481F Variant in Complex with Follower Peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 23% PEG 3,350, 0.1 M magnesium chloride, 0.1 M HEPES free acid (pH 7.5), 7 mg/mL protein, Protein was preincubated with 1 mM PSA1 [14-32]
Crystal Properties Matthews coefficient Solvent content 1.98 37.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.947 α = 90 b = 59.629 β = 93.12 c = 134.164 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.07814 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.37 86.9 99.2 0.092 14 6.2 55622
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.373 2.381 96.2 0.751 2.1 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.37 86.8 52877 2744 99.18 0.23865 0.23629 0.2397 0.28405 0.2854 RANDOM 51.422
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.01 0.06 0.22 3.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.938 r_dihedral_angle_3_deg 15.614 r_dihedral_angle_4_deg 15.232 r_long_range_B_refined 8.413 r_long_range_B_other 8.413 r_dihedral_angle_1_deg 6.531 r_scangle_other 5.636 r_mcangle_it 5.385 r_mcangle_other 5.385 r_scbond_it 3.512
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.938 r_dihedral_angle_3_deg 15.614 r_dihedral_angle_4_deg 15.232 r_long_range_B_refined 8.413 r_long_range_B_other 8.413 r_dihedral_angle_1_deg 6.531 r_scangle_other 5.636 r_mcangle_it 5.385 r_mcangle_other 5.385 r_scbond_it 3.512 r_scbond_other 3.512 r_mcbond_it 3.482 r_mcbond_other 3.481 r_angle_refined_deg 1.324 r_angle_other_deg 0.881 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10709 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling PHASER phasing