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PCY1 H695A Variant in Complex with Follower Peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 282 16 % PEG 8,000, 50 mM calcium acetate, 0.1 M sodium cacodylate, 8 mg/mL protein, Protein was preincubated with 1 mM presegetalin A1 [14-32]
Crystal Properties Matthews coefficient Solvent content 2.15 42.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.02 α = 87.49 b = 85.614 β = 78.51 c = 137.87 γ = 89.44
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97857 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.94 44.9 98.8 0.127 11 3.9 61150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.94 2.95 98.9 0.506 2.8 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.94 44.9 58051 3094 98.76 0.18843 0.18633 0.1898 0.22742 0.2278 RANDOM 32.908
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.33 0.66 1 0.09 0.13 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.004 r_dihedral_angle_4_deg 16.734 r_dihedral_angle_3_deg 15.904 r_dihedral_angle_1_deg 6.237 r_long_range_B_refined 5.712 r_long_range_B_other 5.712 r_scangle_other 3.617 r_mcangle_it 3.519 r_mcangle_other 3.519 r_scbond_it 2.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.004 r_dihedral_angle_4_deg 16.734 r_dihedral_angle_3_deg 15.904 r_dihedral_angle_1_deg 6.237 r_long_range_B_refined 5.712 r_long_range_B_other 5.712 r_scangle_other 3.617 r_mcangle_it 3.519 r_mcangle_other 3.519 r_scbond_it 2.095 r_scbond_other 2.095 r_mcbond_it 2.079 r_mcbond_other 2.079 r_angle_refined_deg 1.407 r_angle_other_deg 1.132 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22634 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling PHASER phasing