5UVJ

Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4ZIX 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE329818 % (w/v) NaCl, 6 % (v/v) PEG 6000, 1 M sodium acetate pH 3.0
Crystal Properties
Matthews coefficientSolvent content
2.0740.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.1α = 90
b = 79.1β = 90
c = 38γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELDECTRIS PILATUS 6M2016-08-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D1.03APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.053599.790.97811.2873.37164
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.10.4360.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4ZIX2.0535716481699.790.232750.228630.268RANDOM35.203
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.07-0.070.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.156
r_dihedral_angle_4_deg16.288
r_dihedral_angle_3_deg12.298
r_long_range_B_refined8.094
r_long_range_B_other8.089
r_dihedral_angle_1_deg5.685
r_scangle_other5.564
r_scbond_it3.564
r_scbond_other3.551
r_mcangle_other3.255
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.156
r_dihedral_angle_4_deg16.288
r_dihedral_angle_3_deg12.298
r_long_range_B_refined8.094
r_long_range_B_other8.089
r_dihedral_angle_1_deg5.685
r_scangle_other5.564
r_scbond_it3.564
r_scbond_other3.551
r_mcangle_other3.255
r_mcangle_it3.25
r_mcbond_it2.143
r_mcbond_other2.137
r_angle_refined_deg1.306
r_angle_other_deg0.965
r_chiral_restr0.076
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms18
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
CrystFELdata scaling
Cheetahdata collection
MOLREPphasing