5UVI

Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5K2B 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1LIPIDIC CUBIC PHASE52930.1 M sodium citrate pH 5.0, 32 % PEG 400, 75 mM sodium thocyanate
Crystal Properties
Matthews coefficientSolvent content
2.5952.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.3α = 90
b = 180.3β = 90
c = 142.6γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELDECTRIS PILATUS3 6M2016-08-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D1.03APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.24599.80.9927.7142.67702
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.2898.320.423

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5K2B3.2457702130199.80.247860.241320.28721RANDOM107.47
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.46-3.1-0.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.894
r_dihedral_angle_4_deg16.548
r_dihedral_angle_3_deg13.034
r_long_range_B_refined12.834
r_long_range_B_other12.826
r_mcangle_other7.72
r_mcangle_it7.718
r_scangle_other7.173
r_mcbond_it4.728
r_mcbond_other4.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.894
r_dihedral_angle_4_deg16.548
r_dihedral_angle_3_deg13.034
r_long_range_B_refined12.834
r_long_range_B_other12.826
r_mcangle_other7.72
r_mcangle_it7.718
r_scangle_other7.173
r_mcbond_it4.728
r_mcbond_other4.72
r_dihedral_angle_1_deg4.658
r_scbond_it4.266
r_scbond_other4.265
r_angle_refined_deg1.614
r_angle_other_deg1.068
r_chiral_restr0.058
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2978
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms152

Software

Software
Software NamePurpose
REFMACrefinement
Cheetahdata collection
CrystFELdata scaling
CrystFELdata reduction
MOLREPphasing