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Interleukin-3 Receptor Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JZJ 4JZJ, 1JLI experimental model PDB 1JLI 4JZJ, 1JLI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 20% PEG 8000, 200 mM NaCI, 100 mM
citrate-phosphate buffer pH 5
Crystal Properties Matthews coefficient Solvent content 2.81 56.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.039 α = 90 b = 132.039 β = 90 c = 210.631 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.954 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 114.35 100 0.17 25.7 8.1 30501
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 100 0.74 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JZJ, 1JLI 2.7 114.35 28930 1535 99.95 0.24404 0.24177 0.2446 0.28564 0.2911 RANDOM 44.007
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.64 -0.82 -1.64 5.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.74 r_dihedral_angle_4_deg 16.766 r_dihedral_angle_3_deg 15.387 r_dihedral_angle_1_deg 6.316 r_long_range_B_refined 4.676 r_long_range_B_other 4.676 r_mcangle_it 2.763 r_mcangle_other 2.762 r_scangle_other 2.56 r_mcbond_it 1.549
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.74 r_dihedral_angle_4_deg 16.766 r_dihedral_angle_3_deg 15.387 r_dihedral_angle_1_deg 6.316 r_long_range_B_refined 4.676 r_long_range_B_other 4.676 r_mcangle_it 2.763 r_mcangle_other 2.762 r_scangle_other 2.56 r_mcbond_it 1.549 r_mcbond_other 1.549 r_scbond_it 1.455 r_scbond_other 1.455 r_angle_refined_deg 1.405 r_angle_other_deg 1.198 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5964 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 197
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing