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Tetragonal thermolysin (295 K) in the presence of 50% mpd
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 Protein: 50 mg/mL in 45% DMSO, 0.5 M ZnCl2
Well: ~2 M AmSO4
Crystal Properties Matthews coefficient Solvent content 3.76 67.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.026 α = 90 b = 98.026 β = 90 c = 107.522 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 CCD OXFORD ONYX CCD 2015-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20.8 99.4 0.999 14.7 4.2 131139 18.4059349642
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 98.4 0.536 1.1 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.60001390701 20.758774984 1.33421409687 130994 3983 99.213826951 0.144862439573 0.144493900079 0.1445 0.156491093947 0.1584 25.8901447676
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.8657460216 f_angle_d 0.914028563225 f_chiral_restr 0.0565553827655 f_bond_d 0.0078748023055 f_plane_restr 0.0061229781725
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2432 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 42
Software Software Software Name Purpose PHENIX refinement CrysalisPro data collection CrysalisPro data reduction SCALA data scaling PHENIX phasing