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FGFR1 kinase domain complex with SN37333 in reversible binding mode
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WUN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 20% MPEG 5000, 0.1 M sodium cacodylate pH 7.5, 0.2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.47 50.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 213.05 α = 90 b = 51.783 β = 106.87 c = 66.07 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2016-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 19.54 99.8 0.154 0.041 0.999 18.4 14.9 35322
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 100 0.349 0.736 2.4 15 3440
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WUN 2.2 19.54 33557 1758 99.71 0.2296 0.22715 0.232 0.27658 0.2783 RANDOM 41.735
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 0.38 0.42 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.238 r_dihedral_angle_3_deg 14.034 r_dihedral_angle_4_deg 13.839 r_dihedral_angle_1_deg 5.772 r_long_range_B_refined 3.419 r_long_range_B_other 3.408 r_mcangle_it 2.047 r_mcangle_other 2.047 r_scangle_other 2.042 r_angle_refined_deg 1.383
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.238 r_dihedral_angle_3_deg 14.034 r_dihedral_angle_4_deg 13.839 r_dihedral_angle_1_deg 5.772 r_long_range_B_refined 3.419 r_long_range_B_other 3.408 r_mcangle_it 2.047 r_mcangle_other 2.047 r_scangle_other 2.042 r_angle_refined_deg 1.383 r_scbond_it 1.257 r_scbond_other 1.257 r_mcbond_it 1.229 r_mcbond_other 1.229 r_angle_other_deg 0.782 r_chiral_restr 0.093 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4161 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing