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Tetragonal thermolysin (295 K) in the presence of 50% xylose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 Drop: 45% DMSO, 0.5 M ZnCl2, 50 mg/mL protein
Well: ~2 M AmSO4
Crystal Properties Matthews coefficient Solvent content 3.75 67.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.659 α = 90 b = 97.659 β = 90 c = 108.069 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 CCD OXFORD ONYX CCD 2015-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION NOVA 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20.2 99.4 0.998 10.1 4.2 17.8881911535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 99.2 0.258 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.60004437941 20.2103390027 0.599035467022 121381 3661 92.1696673324 0.161675976423 0.161064848659 0.1598 0.181278229297 0.1818 25.9817184503
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.74404077227 f_angle_d 0.885163312991 f_chiral_restr 0.0538427923348 f_bond_d 0.00709805489885 f_plane_restr 0.00585083125188
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2432 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 65
Software Software Software Name Purpose PHENIX refinement SCALA data scaling PDB_EXTRACT data extraction CrysalisPro data reduction PHENIX phasing