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 5UKZ | pdb_00005ukz

NMR Solution structure of chemically synthesized antilisterial Pediocin PA-1 M31L analog.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D TOCSY3.33 mg/mL NA-1H Pediocin PA-1 M31Ltrifluoroethanol/water02.81 atm313Bruker AVANCE III 600
42D NOESY3.33 mg/mL NA-1H Pediocin PA-1 M31Ltrifluoroethanol/water02.81 atm313Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
naFor this entry, the authors only used chemical shift values without constraints. The authors used the CS-ROSETTA protocol which allows structure determination of proteins based on chemical shift information alone.CS-ROSETTA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number40000
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentTopSpin3.5Bruker Biospin
2refinementCS-ROSETTA3.7Shen, Vernon, Baker and Bax
3structure calculationCS-ROSETTA3.7Shen, Vernon, Baker and Bax