5UJN
Representative 2-conformer ensembles of K27-linked Ub2 from RDC data
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 150 uM [U-99% 15N] distal K27-Ub2, 20 mM NaPhosphate, 0.02 % NaN3 | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 296 | Bruker AVANCE III 600 |
2 | 2D 1H-15N HSQC | 150 uM [U-99% 15N] proximal K27-Ub2, 20 mM NaPhosphate, 0.02 % NaN3 | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 296 | Bruker AVANCE III 600 |
3 | 2D 1H-15N HSQC | 150 uM [U-99% 15N] distal K27-Ub2, 20 mM NaPhosphate, 0.02 % NaN3 | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 296 | Bruker AVANCE III 600 |
4 | 2D 1H-15N HSQC | 150 uM [U-99% 15N] proximal K27-Ub2, 20 mM NaPhosphate, 0.02 % NaN3 | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 296 | Bruker AVANCE III 600 |
5 | 2D 1H-15N HSQC | 150 uM [U-99% 15N] distal K27-Ub2, 20 mM NaPhosphate, 0.02 % NaN3 | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 296 | Bruker AVANCE III 800 |
6 | 2D 1H-15N HSQC | 150 uM [U-99% 15N] proximal K27-Ub2, 20 mM NaPhosphate, 0.02 % NaN3 | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 296 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
2 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
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Method | Details | Software |
na | Using ~100 RDC restraints, ARMOR was used to select 2-member ensembles of K27-Ub2 that are in best agreement with RDC data. This generated a total of 10 2-conformer ensembles for this entry. | ARMOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the best agreement with RDC data |
Conformers Calculated Total Number | 100000 |
Conformers Submitted Total Number | 20 |
Representative Model | 20 (structures with best agreement with rdc data) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | ARMOR | Berlin K, Castaneda, CA, Fushman D | |
2 | chemical shift assignment | Sparky | Goddard | |
5 | peak picking | Sparky | Goddard |