X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52940.1 M HEPES pH 7.5, 4.3 M Sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.0740.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.228α = 90
b = 77.228β = 90
c = 122.346γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBruker Platinum 135HELIOS MIRRORS2012-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9940.7897.90.154810.611.928968
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.992.0990.10.62161.43.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT240.7827187146298.20.167320.164080.22886RANDOM21.569
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.05-0.02-0.050.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.699
r_dihedral_angle_3_deg14.66
r_dihedral_angle_4_deg14.333
r_dihedral_angle_1_deg6.393
r_long_range_B_refined4.875
r_long_range_B_other4.713
r_scangle_other3.365
r_scbond_it2.21
r_scbond_other2.21
r_mcangle_other2.153
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.699
r_dihedral_angle_3_deg14.66
r_dihedral_angle_4_deg14.333
r_dihedral_angle_1_deg6.393
r_long_range_B_refined4.875
r_long_range_B_other4.713
r_scangle_other3.365
r_scbond_it2.21
r_scbond_other2.21
r_mcangle_other2.153
r_mcangle_it2.149
r_angle_refined_deg1.648
r_mcbond_it1.465
r_mcbond_other1.455
r_angle_other_deg1.05
r_chiral_restr0.107
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3015
Nucleic Acid Atoms
Solvent Atoms364
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
Cootmodel building
SHELXSphasing
PROTEUM PLUSdata collection