X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2X23 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82930.1 M Tris/HCl, pH 8.0; 2.5 M NaCl
Crystal Properties
Matthews coefficientSolvent content
2.8757.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.92α = 90
b = 130.359β = 90
c = 176.36γ = 90
Symmetry
Space GroupP 21 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-10-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918409BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.846.399.50.1299.13.752514
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.8998.90.6290.5871.93.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2x232.846.349906257699.330.207860.206040.2437RANDOM38.275
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.04-1.010.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.841
r_dihedral_angle_4_deg20.385
r_dihedral_angle_3_deg15.516
r_dihedral_angle_1_deg6.075
r_long_range_B_refined1.971
r_long_range_B_other1.971
r_angle_refined_deg1.665
r_angle_other_deg1.076
r_scangle_other1.038
r_mcangle_it0.998
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.841
r_dihedral_angle_4_deg20.385
r_dihedral_angle_3_deg15.516
r_dihedral_angle_1_deg6.075
r_long_range_B_refined1.971
r_long_range_B_other1.971
r_angle_refined_deg1.665
r_angle_other_deg1.076
r_scangle_other1.038
r_mcangle_it0.998
r_mcangle_other0.994
r_scbond_it0.657
r_scbond_other0.657
r_mcbond_it0.636
r_mcbond_other0.63
r_chiral_restr0.088
r_bond_refined_d0.016
r_bond_other_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11976
Nucleic Acid Atoms
Solvent Atoms224
Heterogen Atoms443

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing
Cootmodel building