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Novel crystal structure of a hypothetical protein from Neisseria gonorrhoeae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 290 MCSG1 C1 (284216c1): 100mM Ammonium acetate, 100mM Bis-tris:HCl pH5.5, 17% (w/v) PEG 10000: protein conc. 20.9mg/mL, 20eg: puck pdx4-1: aps21idg 20161216 2 VAPOR DIFFUSION, SITTING DROP 4.5 290 JCSG+ A1 (284217a1): 200mM Lithium sulfate, 100mM Sodium acetate pH4.5, 50% (w/v) PEG 400: protein conc. 20.9mg/mL, 10% pegasis: handmount, sat3 20161020
Crystal Properties Matthews coefficient Solvent content 2.41 49 2.71 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.22 α = 90 b = 74.52 β = 90 c = 86.16 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 290 CCD RAYONIX MX-300 2016-12-16 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD RIGAKU SATURN 944+ 2016-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97857 APS 21-ID-G 2 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.9 0.045 0.999 22.58 6.036 52482 -3 15.47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 100 0.504 0.911 3.52 6.065
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.5 50 1.35 52477 2081 99.9 0.1557 0.1548 0.1553 0.1768 0.1774 21.7541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.41 f_angle_d 0.814 f_chiral_restr 0.097 f_bond_d 0.005 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2280 Nucleic Acid Atoms Solvent Atoms 498 Heterogen Atoms 59
Software Software Software Name Purpose XSCALE data scaling PHASER phasing PHENIX refinement PDB_EXTRACT data extraction XDS data reduction