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XAC2383 from Xanthomonas citri bound to phosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 298 100 mM Tris pH 8.0, 300 mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.03 39.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.88 α = 90 b = 67.094 β = 90 c = 113.492 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV++ 2014-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 43.71 99.11 14.54 4.5 29102
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.09 43.71 29102 1566 99.12 0.17265 0.16975 0.1798 0.22601 0.2319 RANDOM 27.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 -0.02 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.691 r_dihedral_angle_4_deg 18.449 r_dihedral_angle_3_deg 14.047 r_dihedral_angle_1_deg 6.448 r_long_range_B_refined 5.946 r_long_range_B_other 5.905 r_scangle_other 4.488 r_scbond_it 2.968 r_scbond_other 2.963 r_mcangle_other 2.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.691 r_dihedral_angle_4_deg 18.449 r_dihedral_angle_3_deg 14.047 r_dihedral_angle_1_deg 6.448 r_long_range_B_refined 5.946 r_long_range_B_other 5.905 r_scangle_other 4.488 r_scbond_it 2.968 r_scbond_other 2.963 r_mcangle_other 2.934 r_mcangle_it 2.933 r_mcbond_it 2.072 r_mcbond_other 2.063 r_angle_refined_deg 1.766 r_angle_other_deg 1.041 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4373 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling PHASER phasing