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Ocellatin-LB1, solution structure in SDS micelle by NMR spectroscopy
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O 95% H2O/5% D2O Null 4 Ambient 303.15 Bruker AVANCE III 800 2 2D 1H-1H TOCSY 2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O 95% H2O/5% D2O Null 4 Ambient 303.15 Bruker AVANCE III 800 3 2D 1H-13C HSQC 2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O 95% H2O/5% D2O Null 4 Ambient 303.15 Bruker AVANCE III 800 4 2D 1H-15N HMQC 2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O 95% H2O/5% D2O Null 4 Ambient 303.15 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment NMRView Johnson, One Moon Scientific 4 data analysis NMRView Johnson, One Moon Scientific 5 geometry optimization X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 6 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 7 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 8 data analysis MOLMOL Koradi, Billeter and Wuthrich 9 data analysis Procheck Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton