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NMR structure of the complex between the KIX domain of CBP and the transactivation domain 1 of p65
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8 mM [U-99% 13C; U-99% 15N] p65 TA1, 2.4 mM KIX domain 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 2 3D HNCO 0.8 mM [U-99% 13C; U-99% 15N] p65 TA1, 2.4 mM KIX domain 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 3 3D HNCACB 0.8 mM [U-99% 13C; U-99% 15N] p65 TA1, 2.4 mM KIX domain 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 4 3D HCCH-TOCSY 0.8 mM [U-99% 13C; U-99% 15N] p65 TA1, 2.4 mM KIX domain 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 5 3D H(CCO)NH 0.8 mM [U-99% 13C; U-99% 15N] p65 TA1, 2.4 mM KIX domain 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 6 2D 1H-13C HSQC 0.8 mM [U-99% 13C; U-99% 15N] p65 TA1, 2.4 mM CBP-KIX 100% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 17 3D 1H-13C NOESY 0.8 mM [U-99% 13C; U-99% 15N] p65 TA1, 2.4 mM CBP-KIX 100% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 16 2D 1H-15N HSQC 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 15 3D HNCO 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 14 3D HNCACB 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 13 3D HCCH-TOCSY 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 12 3D H(CCO)NH 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 11 3D 1H-15N NOESY 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 90% H2O/10% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 10 2D 1H-13C HSQC aliphatic 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 100% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 9 2D 1H-13C HSQC aromatic 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 100% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 8 3D 1H-13C NOESY 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 100% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 600 7 3D-intermolecular-NOESY 0.8 mM [U-99% 13C; U-99% 15N] CBP-KIX, 2.4 mM p65 TA1 100% D2O 0 M 6.5 1 atm 298 Varian UNITYINOVA 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITYINOVA 600 2 Varian UNITYINOVA 800
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 260 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis Analysis CCPN 3 structure calculation ARIA Linge, O'Donoghue and Nilges 4 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read