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Crystal structure of foldase protein PrsA from Streptococcus pneumoniae str. Canada MDR_19A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 2M Ammonium Sulfate, 0.05 M CAPSO pH 11
Crystal Properties Matthews coefficient Solvent content 2.34 47.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.315 α = 90 b = 70.94 β = 91.49 c = 116.626 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2012-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 50 98.7 0.09 0.09 1 20.04 9.8 43458 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.49 90.9 0.58 0.9 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.55 50 30311 1646 82.35 0.22879 0.22527 0.2272 0.29708 0.2977 RANDOM 56.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.11 0.19 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.267 r_dihedral_angle_3_deg 12.998 r_dihedral_angle_4_deg 12.724 r_long_range_B_refined 7.527 r_long_range_B_other 7.526 r_scangle_other 5.421 r_dihedral_angle_1_deg 5.089 r_mcangle_it 4.66 r_mcangle_other 4.659 r_scbond_it 3.413
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.267 r_dihedral_angle_3_deg 12.998 r_dihedral_angle_4_deg 12.724 r_long_range_B_refined 7.527 r_long_range_B_other 7.526 r_scangle_other 5.421 r_dihedral_angle_1_deg 5.089 r_mcangle_it 4.66 r_mcangle_other 4.659 r_scbond_it 3.413 r_scbond_other 3.413 r_mcbond_it 2.87 r_mcbond_other 2.869 r_angle_refined_deg 0.985 r_angle_other_deg 0.797 r_chiral_restr 0.052 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8456 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing