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Optimization of spirocyclic proline tryptophanhydroxylase-1 inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 20% PEG 3350, 0.1 Na Citrate, pH 5.5, 4% Acetonitrile
Crystal Properties Matthews coefficient Solvent content 1.99 38.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.198 α = 90 b = 58.161 β = 93.72 c = 51.567 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 190 CCD MARMOSAIC 300 mm CCD 2014-01-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 1.0 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.2 0.066 8 3.7 44280
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 93.1 0.447 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 33.67 41475 2199 98.55 0.18819 0.18679 0.1953 0.21538 0.2234 RANDOM 26.679
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.322 r_dihedral_angle_4_deg 18.697 r_dihedral_angle_3_deg 12.268 r_dihedral_angle_1_deg 5.714 r_long_range_B_refined 4.881 r_long_range_B_other 4.783 r_scangle_other 3.392 r_mcangle_it 2.63 r_mcangle_other 2.629 r_scbond_it 2.214
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.322 r_dihedral_angle_4_deg 18.697 r_dihedral_angle_3_deg 12.268 r_dihedral_angle_1_deg 5.714 r_long_range_B_refined 4.881 r_long_range_B_other 4.783 r_scangle_other 3.392 r_mcangle_it 2.63 r_mcangle_other 2.629 r_scbond_it 2.214 r_scbond_other 2.213 r_mcbond_it 1.755 r_mcbond_other 1.743 r_angle_refined_deg 1.562 r_angle_other_deg 0.993 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2133 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data scaling PHASER phasing PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling