☰ Navigation Tabs
Binding domain of BoNT/A complexed with ganglioside variant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 20% PEG3350, 0.2 M potassium thiocyanate, 0.1 M BisTris propane pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.15 42.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.515 α = 90 b = 104.33 β = 115.97 c = 69.406 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 39.05 99.8 0.116 0.138 0.075 0.991 6.2 3.4 25875
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 99.7 0.577 0.694 0.381 0.686 3.2 3159
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 39.05 24500 1325 99.68 0.223 0.2222 0.225 0.2396 0.2413 RANDOM 54.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.18 0.84 -3.62 -2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.253 r_dihedral_angle_4_deg 18.012 r_dihedral_angle_3_deg 17.19 r_dihedral_angle_1_deg 10.871 r_mcangle_it 6 r_mcbond_it 3.856 r_mcbond_other 3.854 r_angle_other_deg 3.573 r_angle_refined_deg 1.21 r_chiral_restr 0.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.253 r_dihedral_angle_4_deg 18.012 r_dihedral_angle_3_deg 17.19 r_dihedral_angle_1_deg 10.871 r_mcangle_it 6 r_mcbond_it 3.856 r_mcbond_other 3.854 r_angle_other_deg 3.573 r_angle_refined_deg 1.21 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_other 0.01 r_gen_planes_refined 0.008 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6729 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PHASER phasing PDB_EXTRACT data extraction