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Re-refinement of thermus thermophilus RNA polymerase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 298 MES, MAGNESIUM FORMATE, PEG 8000,SPERMINE, PH 5.85
Crystal Properties Matthews coefficient Solvent content 4.69 73.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 235.09 α = 90 b = 235.09 β = 90 c = 250.88 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3 46.8 149560 1206 95.84 0.20306 0.20282 0.2035 0.23389 0.2572 RANDOM 129.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.65 1.65 -3.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.861 r_dihedral_angle_3_deg 21.462 r_dihedral_angle_4_deg 18.038 r_scangle_it 9.881 r_dihedral_angle_1_deg 6.571 r_scbond_it 5.97 r_mcangle_it 5.823 r_mcbond_it 3.316 r_angle_refined_deg 1.311 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.861 r_dihedral_angle_3_deg 21.462 r_dihedral_angle_4_deg 18.038 r_scangle_it 9.881 r_dihedral_angle_1_deg 6.571 r_scbond_it 5.97 r_mcangle_it 5.823 r_mcbond_it 3.316 r_angle_refined_deg 1.311 r_chiral_restr 0.092 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 27985 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement