☰ Navigation Tabs
Crystal structure of Os79 from O. sativa in complex with U2F and trichothecene.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 100 mM MES pH 6.5, 200 mM glycine, 23% MEPEG 2000.
Crystal Properties Matthews coefficient Solvent content 2.4 48.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.441 α = 90 b = 83.155 β = 90 c = 99.425 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 43.5 99.6 19.1 7.8 25837
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.19 43.5 24520 1317 99.53 0.16242 0.15958 0.21335 0.2301 RANDOM 33.808
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.18 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.947 r_dihedral_angle_4_deg 17.702 r_dihedral_angle_3_deg 14.656 r_long_range_B_refined 8.183 r_long_range_B_other 8.166 r_dihedral_angle_1_deg 6.325 r_scangle_other 5.98 r_scbond_it 3.962 r_scbond_other 3.961 r_mcangle_it 3.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.947 r_dihedral_angle_4_deg 17.702 r_dihedral_angle_3_deg 14.656 r_long_range_B_refined 8.183 r_long_range_B_other 8.166 r_dihedral_angle_1_deg 6.325 r_scangle_other 5.98 r_scbond_it 3.962 r_scbond_other 3.961 r_mcangle_it 3.903 r_mcangle_other 3.902 r_mcbond_it 2.714 r_mcbond_other 2.712 r_angle_refined_deg 1.948 r_angle_other_deg 0.969 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3407 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement PHENIX refinement HKL-3000 data scaling