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Re-refinement of Thermus thermopiles DNA-directed RNA polymerase structure
Crystallization Crystal Properties Matthews coefficient Solvent content 4.71 73.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 236.35 α = 90 b = 236.35 β = 90 c = 249.04 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2001-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45PX 1.02 SPring-8 BL45PX
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.71 48.51 198576 7528 96.94 0.26588 0.2651 0.2619 0.2864 0.2826 RANDOM 121.351
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 22.66 22.66 -45.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.784 r_dihedral_angle_3_deg 21.512 r_dihedral_angle_4_deg 16.401 r_scangle_it 7.237 r_dihedral_angle_1_deg 6.514 r_mcangle_it 5.559 r_scbond_it 5.312 r_mcbond_it 3.354 r_angle_refined_deg 1.284 r_chiral_restr 0.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.784 r_dihedral_angle_3_deg 21.512 r_dihedral_angle_4_deg 16.401 r_scangle_it 7.237 r_dihedral_angle_1_deg 6.514 r_mcangle_it 5.559 r_scbond_it 5.312 r_mcbond_it 3.354 r_angle_refined_deg 1.284 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 28225 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement