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COMPLEX BETWEEN HUMAN CD27 AND FAB FRAGMENTS OF ANTIBODIES M2177 AND H2191
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5TL5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.1 M TRIS PH 8.5, 22% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.27 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.71 α = 90 b = 52.96 β = 109.52 c = 140.6 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2013-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 30 98.4 0.062 14.2 3.4 53961 -3 57
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 88.3 0.487 2.6 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5TL5 2.7 20 52594 1105 99.1 0.21422 0.21318 0.2141 0.26318 0.2639 RANDOM 61.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.54 -0.26 -0.29 -2.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.377 r_dihedral_angle_4_deg 19.55 r_dihedral_angle_3_deg 16.478 r_long_range_B_refined 8.466 r_dihedral_angle_1_deg 5.916 r_mcangle_it 4.804 r_scbond_it 3.576 r_mcbond_it 2.917 r_angle_refined_deg 1.25 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.377 r_dihedral_angle_4_deg 19.55 r_dihedral_angle_3_deg 16.478 r_long_range_B_refined 8.466 r_dihedral_angle_1_deg 5.916 r_mcangle_it 4.804 r_scbond_it 3.576 r_mcbond_it 2.917 r_angle_refined_deg 1.25 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14156 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing