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COMPLEX BETWEEN HUMAN CD27 AND ANTIBODY M2177
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IQW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M MES PH 6.5, 17% PEG 4000, 0.2 M AMMONIUM CITRATE
Crystal Properties Matthews coefficient Solvent content 2.58 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 274.2 α = 90 b = 37.41 β = 98.82 c = 61.08 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2011-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 97.2 0.03 20 2.8 56791 -3 33.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 96.5 0.252 4.1 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1IQW 1.8 15 54736 1138 95.2 0.19725 0.1965 0.1985 0.23178 0.2327 RANDOM 38.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.24 -1.24 -0.34 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.904 r_scangle_it 16.178 r_dihedral_angle_4_deg 14.346 r_dihedral_angle_3_deg 13.189 r_scbond_it 12.661 r_dihedral_angle_1_deg 6.136 r_mcangle_it 4.629 r_mcbond_it 3.011 r_angle_refined_deg 1.146 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.904 r_scangle_it 16.178 r_dihedral_angle_4_deg 14.346 r_dihedral_angle_3_deg 13.189 r_scbond_it 12.661 r_dihedral_angle_1_deg 6.136 r_mcangle_it 4.629 r_mcbond_it 3.011 r_angle_refined_deg 1.146 r_chiral_restr 0.077 r_bond_refined_d 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4069 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 19
Software Software Software Name Purpose XDS data reduction XDS data scaling REFMAC refinement PHASER phasing