☰ Navigation Tabs
Crystal Structure of 2-Hydroxycyclohepta-2,4,6-triene-1-thione bound to human carbonic anhydrase 2 L198G
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KS3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 291 Ammonium Sulfate, Tris, pH 8.0 VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.06 40.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.123 α = 90 b = 41.136 β = 104.44 c = 71.865 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 2015-08-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5478
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 69.59 99.8 0.0489 14.18 6.32 46899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 94.5 0.5822 3.3 1663
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3KS3 1.42 40 42962 2261 99.94 0.16432 0.16272 0.1727 0.19574 0.2068 RANDOM 13.294
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.07 -0.04 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.752 r_dihedral_angle_4_deg 23.57 r_dihedral_angle_3_deg 13.238 r_dihedral_angle_1_deg 7.345 r_long_range_B_refined 4.951 r_long_range_B_other 4.951 r_scangle_other 3.917 r_scbond_it 2.576 r_scbond_other 2.575 r_angle_refined_deg 2.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.752 r_dihedral_angle_4_deg 23.57 r_dihedral_angle_3_deg 13.238 r_dihedral_angle_1_deg 7.345 r_long_range_B_refined 4.951 r_long_range_B_other 4.951 r_scangle_other 3.917 r_scbond_it 2.576 r_scbond_other 2.575 r_angle_refined_deg 2.325 r_mcangle_other 2.191 r_mcangle_it 2.188 r_angle_other_deg 1.52 r_mcbond_it 1.516 r_mcbond_other 1.439 r_chiral_restr 0.152 r_bond_refined_d 0.024 r_gen_planes_refined 0.014 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2045 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement APEX data collection PHASER phasing