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ACC oxidase complex with substrate 1-aminocyclopropane-1-carboxylic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WA6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 10.5 291 sodium dihydrogenphosphate, lithium sulfate, pottasium hydrogen phosphate, CAPS pH 10.5
Crystal Properties Matthews coefficient Solvent content 2.85 56.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.361 α = 90 b = 107.14 β = 90 c = 108.019 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2016-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 39.96 100 1 30 43.9 13101
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 100 0.718 1.7 44.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WA6 2.6 39.96 12427 676 99.91 0.23491 0.23204 0.2337 0.29079 0.2892 RANDOM 76.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.55 2.12 3.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.882 r_dihedral_angle_3_deg 14.152 r_dihedral_angle_4_deg 13.416 r_dihedral_angle_1_deg 5.712 r_long_range_B_refined 5.007 r_long_range_B_other 5.007 r_mcangle_it 3.378 r_mcangle_other 3.378 r_scangle_other 3.066 r_mcbond_it 1.948
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.882 r_dihedral_angle_3_deg 14.152 r_dihedral_angle_4_deg 13.416 r_dihedral_angle_1_deg 5.712 r_long_range_B_refined 5.007 r_long_range_B_other 5.007 r_mcangle_it 3.378 r_mcangle_other 3.378 r_scangle_other 3.066 r_mcbond_it 1.948 r_mcbond_other 1.947 r_scbond_it 1.738 r_scbond_other 1.737 r_angle_refined_deg 1.032 r_angle_other_deg 0.851 r_chiral_restr 0.057 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2359 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing