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Crystal structure of murine NF-kappaB inducing kinase (NIK) bound to aryl pyrrole fragment 17
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 277 0.3-0.9M ammonium sulphate,
0.05-0.1M sodium citrate,
0.7-1.0M Lithium sulphate
Crystal Properties Matthews coefficient Solvent content 3.33 63.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.969 α = 90 b = 143.969 β = 90 c = 46.455 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2011-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9173 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.63 28.79 98.5 0.074 16.6 5.9 28412
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.63 2.76 89.4 0.66 2 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.63 28.79 25565 2953 98.81 0.20325 0.19796 0.1979 0.25024 0.2471 RANDOM 59.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.644 r_dihedral_angle_3_deg 16.946 r_dihedral_angle_4_deg 15.353 r_dihedral_angle_1_deg 6.831 r_long_range_B_refined 5.002 r_long_range_B_other 5.001 r_scangle_other 2.389 r_mcangle_it 2.24 r_mcangle_other 2.24 r_angle_refined_deg 1.601
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.644 r_dihedral_angle_3_deg 16.946 r_dihedral_angle_4_deg 15.353 r_dihedral_angle_1_deg 6.831 r_long_range_B_refined 5.002 r_long_range_B_other 5.001 r_scangle_other 2.389 r_mcangle_it 2.24 r_mcangle_other 2.24 r_angle_refined_deg 1.601 r_scbond_it 1.51 r_scbond_other 1.51 r_mcbond_it 1.334 r_mcbond_other 1.328 r_angle_other_deg 0.999 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5060 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing